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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2947370 chr8:12836778 A/G 4.45E-7 490 11.67 15.9 15.93 KM Plot
THCA rs2947372 chr8:12841349 G/C 4.45E-7 489 15.93 16.13 11.67 KM Plot
THCA rs2952295 chr17:66447421 A/T 0.000143 483 14.9 14.97 16.35 KM Plot
THCA rs2952296 chr17:66445469 G/C 0.000114 480 14.9 14.93 16.3 KM Plot
THCA rs2979118 chr8:52435079 T/C 0.000245 482 14.8 17.83 19.72 KM Plot
THCA rs2979126 chr8:52428061 A/G 1.49E-5 490 14.85 17.83 18.13 KM Plot
THCA rs2979127 chr8:52428567 A/G 1.36E-5 490 19.23 17.83 14.85 KM Plot
THCA rs2979175 chr8:8312062 T/C 1.21E-10 467 15.68 17.13 12.97 KM Plot
THCA rs2989950 chr9:72011370 A/G 2.67E-11 489 15.83 17.03 8.83 KM Plot
THCA rs2991966 chr1:45999503 G/A 6.78E-5 485 10.4 16.07 16.97 KM Plot
THCA rs2993257 chr1:45997601 C/A 7.61E-5 485 10.6 16.18 16.97 KM Plot
THCA rs2993258 chr1:45998157 G/C 6.78E-5 485 10.4 16.07 16.97 KM Plot
THCA rs2993259 chr1:46001550 T/C 7.61E-5 485 10.6 16.18 16.97 KM Plot
THCA rs3015508 chr1:119125818 A/G 3.95E-5 489 14.57 16.2 15.87 KM Plot
THCA rs3059964 chr1:4644473 ACT/A 0.000269 485 11.28 15.07 16.07 KM Plot